Bioinformatics Class Portfolio

My Classwork for BIMM143 at UC San Diego.

Index of Material

Introductory Materials

• Class 01 Intro to Bioinformatics

• Class 02 Sequence Alignment Fundamentals, Algorithms and Applications

• Class 03 Advanced Sequence Alignment and Database Searching

• Class 04 Intro to R

• Class 05 Data Visualization with ggplot

• Class 06 R Functions and Packages from CRAN and BioConductor

• Class 07 Introduction to ML for Bioinformatics

• Class 08 Breast Cancer Mini Project

• Class 09 Candy Mini Project

• Class 10 Structural Bioinformatics (pt1)

• Class 11 Structural Bioinformatics (pt2: AlphaFold2)

• Class 12 Genome Informatics

• Class 13 Transcriptomics and the Analysis of RNA-Seq Data

• Class 14 RNA-Seq Analysis Mini-Project

• Class 15 Hands-on with Git and Github

• Class 16 Essential UNIX for Bioinformatics

• Class 17 Analyzing Sequencing Data in the Cloud

• Class 18 Mini Project: Investigating Pertussis Resurgence

• Class 19 Mini Project: Cancer Mutation Analysis